Psych Central

Public collections of DNA & RNA sequence data reach 100 gigabases

08/16/05

International collaboration produces this scientific milestone

For nearly 20 years, the three leading public repositories for DNA and RNA sequence data have collaborated to provide access to the ever increasing amount of genetic data produced by institutions around the world. The three repositories have now reached a significant milestone by collecting and disseminating 100 gigabases of sequence data. For a frame of reference, one hundred billion bases is about equal to the number of nerve cells in a human brain and a bit less than the number of stars in the Milky Way.

These 100,000,000,000 bases, or "letters" of the genetic code, represent both individual genes and partial and complete genomes of over 165,000 organisms. While a single gene from organisms as diverse as humans, elephants, earthworms, fruitflies, apple trees, and bacteria can range from less than one hundred to over several thousand bases long, an organism's genome can be longer than one billion bases. The free access to this information allows scientists to study and compare the same data as their colleagues nearly anywhere in the world, and makes possible collaborative research that will lead ultimately to cures for diseases and improved health.

Thanks to their data exchange policy, the three members of the International Nucleotide Sequence Database Collaboration: GenBank (Bethesda, Maryland USA), European Molecular Biology Laboratory's European Bioinformatics Institute (EMBL-Bank in Hinxton, UK), and the DNA Data Bank of Japan (Mishima, Japan) all reached this milestone together.

GenBank is maintained by the National Center for Biotechnology Information (NCBI), a part of the National Library of Medicine, National Institutes of Health. Submitters to GenBank currently contribute over 3 million new DNA sequences per month to the database. More information about GenBank may be found on the NCBI Web site at http://www.ncbi.nlm.nih.gov.

David Lipman, Director of the National Center for Biotechnology Information, commented that "Today's nucleotide sequence databases allow researchers to share completed genomes, the genetic make-up of entire ecosystems, and sequences associated with patents. The International Nucleotide Sequence Database Collaboration (INSDC) has realized the vision of the researchers who initiated the sequence database projects by making the global sharing of nucleotide sequence information possible."

Graham Cameron, Associate Director of EMBL's European Bioinformatics Institute, added "This is an important milestone in the history of the nucleotide sequence databases. From the first EMBL Data Library entry made available in 1982 to today's provision of over 55 million sequence entries from at least 200,000 different organisms, these resources have anticipated the needs of molecular biologists and addressed them-often in the face of a serious lack of resources." More information about EMBL-Bank is on the Web at http://www.ebi.ac.uk/embl.

Takashi Gojobori, Director of the Center for Information Biology and DNA Data Bank of Japan, said: "The INSDC has laid the foundations for the exchange of many types of biological information. As we enter the era of systems biology and researchers begin to exchange complex types of information such as the results of experiments that measure the activities of thousands of genes, or computational models of entire processes, it is important to celebrate the achievements of the three databases that pioneered the open exchange of biological information." More information about the DNA Data Bank of Japan is on the Web at http://www.ddbj.nig.ac.jp/.

Source: Eurekalert & others

Last reviewed: By John M. Grohol, Psy.D. on 21 Feb 2009
    Published on PsychCentral.com. All rights reserved.

 

 

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